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This page contains selected articles, along with, wherever possible, links for their download.

Articles in Refereed International Journals

• Evangelos Stogiannos, Christos Papalitsas, Theodore Andronikos, “Experimental Analysis of Quantum Annealers and Hybrid Solvers Using Benchmark Optimization Problems”, Mathematics (MDPI - Open Access Publishing), Mathematics 2022, 10(8), 1294. DOI: 10.3390/math10081294.
• Theodore Andronikos, Michail Stefanidakis, “A Two-Party Quantum Parliament”, (MDPI - Open Access Publishing), Algorithms 2022, 15(2), 62. DOI: 10.3390/a15020062.
• Michael Ampatzis, Theodore Andronikos, “QKD Based on Symmetric Entangled Bernstein-Vazirani”, Entropy (MDPI - Open Access Publishing), Entropy 2021, 23(7), 870. DOI: 10.3390/e23070870.
• Theodore Andronikos, Alla Sirokofskich, “The Connection between the PQ Penny Flip Game and the Dihedral Groups”, Mathematics (MDPI - Open Access Publishing), Mathematics 2021, 9(10), 1115. DOI: 10.3390/math9101115.
• Christos Papalitsas, Theodore Andronikos, Konstantinos Giannakis, Georgia Theocharopoulou, Sofia Fanarioti, “A QUBO Model for the Traveling Salesman Problem with Time Windows”, (MDPI - Open Access Publishing), Algorithms 2019, 12(11), 224; https://doi.org/10.3390/a12110224.
  
• Christos Papalitsas, Panayiotis Karakostas, Theodore Andronikos, “A Performance Study of the Impact of Different Perturbation Methods on the Efficiency of GVNS for Solving TSP”, (MDPI - Open Access Publishing), Applied System Innovation 2019, 2(4), 31; https://doi.org/10.3390/asi2040031.
  
• Christos Papalitsas, Theodore Andronikos, “Unconventional GVNS for Solving the Garbage Collection Problem with Time Windows”, (MDPI - Open Access Publishing), Technologies 2019, 7(3), 61; https://doi.org/10.3390/technologies7030061.
  
• Konstantinos Giannakis, Georgia Theocharopoulou, Christos Papalitsas, Sofia Fanarioti, Theodore Andronikos, “Quantum Conditional Strategies and Automata for Prisoners’ Dilemmata under the EWL Scheme”, (MDPI - Open Access Publishing), Applied Sciences 2019, 9(13), 2635; https://doi.org/10.3390/app9132635.
  
• Christos Papalitsas, Panayiotis Karakostas, Theodore Andronikos, Spyros Sioutas, Konstantinos Giannakis, “Combinatorial GVNS (General Variable Neighborhood Search) Optimization for Dynamic Garbage Collection”, (MDPI - Open Access Publishing), Algorithms 2018, 11(4), 38; doi:10.3390/a11040038.
  
• Theodore Andronikos, Alla Sirokofskich, Kalliopi Kastampolidou, Magdalini Varvouzou, Konstantinos Giannakis, Alexandros Singh, “Finite Automata Capturing Winning Sequences for All Possible Variants of the PQ Penny Flip Game”, Mathematics, Special Issue Mathematical Game Theory, (MDPI - Open Access Publishing), Mathematics 2018, 6(2), 20; doi:10.3390/math6020020.
  
• Konstantinos Giannakis, Theodore Andronikos, “Membrane automata for modeling biomolecular processes”, Natural Computing, Springer, March 2017, Volume 16, Issue 1, pages 151-163.
  
• Konstantinos Giannakis, Georgia Theocharopoulou, Christos Papalitsas, Theodore Andronikos, Panayiotis Vlamos, “Associating ω-automata to Path Queries on Webs of Linked Data”, Engineering Applications of Artificial Intelligence, Elsevier, Volume 51, May 2016, pages 115-123.
  
• Konstantinos Giannakis, Christos Papalitsas, Kalliopi Kastampolidou, Alexandros Singh, Theodore Andronikos, “Dominant Strategies of Quantum Games on Quantum Periodic Automata”, Computation (MDPI - Open Access Publishing), Volume 3, Issue 4, 2015, pages 586-599.
• Konstantinos Giannakis, Theodore Andronikos, “Use of Buchi automata and randomness for the description of biological processes”, International Journal of Scientific World, Science Publishing Corporation, Volume 3, Νο 1, 2015, pages 113-123.
• Ioannis Riakiotakis, Florina M. Ciorba, Theodore Andronikos, George Papakonstantinou, “Towards the optimal synchronization granularity for dynamic scheduling of pipelined computations on heterogeneous computing systems”, Concurrency and Computation: Practice and Experience, John Wiley & Sons, Volume 24, Issue 18, December 2012, pages 2221–2448.
• Ioannis Riakiotakis, Florina M. Ciorba, Theodore Andronikos, George Papakonstantinou, “Distributed Dynamic Load Balancing for Pipelined Computations on Heterogeneous Systems”, Parallel Computing, Elsevier, Volume 37, Issues 10-11, October-November 2011, Pages 713-729.
• Theodore Andronikos, Florina M. Ciorba, Ioannis Riakiotakis, George Papakonstantinou, Anthony T. Chronopoulos, "Studying the impact of synchronization frequency on scheduling tasks with dependencies in heterogeneous systems", Performance Evaluation, Elsevier, Volume 67, Issue 12, December 2010, Pages 1324-1339.
• Christos Pavlatos, Alexandros C. Dimopoulos, Andrew Koulouris, Theodore Andronikos, Ioannis Panagopoulos, George Papakonstantinou, "Efficient reconfigurable embedded parsers", Computer Languages, Systems & Structures, Elsevier, Volume 35, Issue 2, July 2009, Pages 196-215.
• Theodore Andronikos, Florina M. Ciorba, Panayiotis Theodoropoulos, Dimitrios Kamenopoulos, George Papakonstantinou, “Cronus: A platform for parallel code generation based on computational geometry methods”, Journal of Systems and Software, Elsevier Volume 81, Issue 8, pp. 1389-1405, August 2008.
• Florina M. Ciorba, Ioannis Riakiotakis, Theodore Andronikos, George Papakonstantinou, Anthony T. Chronopoulos, "Enhancing self-scheduling algorithms via synchronization and weighting", Journal of Parallel and Distributed Computing, Elsevier, Volume 68, Issue 2, February 2008, Pages 246-264.
• Theodore Andronikos, George Koletsos and George Stavrinos, "An Alternative Tableaux method for Propositional Linear Temporal Logic", The Bulletin of Symbolic Logic, Association for Symbolic Logic, Volume 12, Issue 2, June 2006.
• Irène Guessarian, Eugénie Foustoucos, Theodore Andronikos, and Foto Afrati, "On temporal logic versus datalog", Theoretical Computer Science, Elsevier, Volume 303, Issue 1, 28 June 2003, Pages 103-133.
• Theodore Andronikos, Nectarios Koziris, George Papakonstantinou, Panayiotis Tsanakas, “Optimal Scheduling for UET/UET-UCT Generalized n-Dimensional Grid Task Graphs”, Journal of Parallel and Distributed Computing, Elsevier, vol. 57, pp. 140-165, May 1999.

Book Chapters

• Kalliopi Kastampolidou, Theodore Andronikos, “Game Theory and Other Unconventional Approaches to Biological Systems”. In: Vlamos P., Kotsireas I.S., Tarnanas I. (eds) Handbook of Computational Neurodegeneration, pp. 1-18. Springer, Cham, eBook ISBN 978-3-319-75479-6. DOI: 10.1007/978-3-319-75479-6_23-1.
• Kalliopi Kastampolidou, Theodore Andronikos, “Microbes and the Games They Play”. In: Vlamos P. (eds) GeNeDis 2020. Advances in Experimental Medicine and Biology, vol 1339, pp. 265-271. Springer, ISBN: 978-3-030-78786-8 (Print) 978-3-030-78787-5 (Online), 2022. DOI: 10.1007/978-3-030-78787-5_32.
• Christos Papalitsas, Kalliopi Kastampolidou, Theodore Andronikos, “Nature and Quantum-Inspired Procedures – A Short Literature Review”. In: Vlamos P. (eds) GeNeDis 2020. Advances in Experimental Medicine and Biology, vol 1138, pp. 129-133. Springer, ISBN: 978-3-030-78774-5 (Print) 978-3-030-78775-2 (Online), 2022. DOI: 10.1007/978-3-030-78775-2_15.
• Kalliopi Kastampolidou, Theodore Andronikos, “A Survey of Evolutionary Games in Biology”. In: Vlamos P. (eds) GeNeDis 2018. Advances in Experimental Medicine and Biology, vol 1194, pp. 253-261. Springer, ISBN: 978-3-030-32621-0 (Print) 978-3-030-32622-7 (Online), 2020.
  
• Kalliopi Kastampolidou, Maria Nefeli Nikiforos, Theodore Andronikos, “A Brief Survey of the Prisoners’ Dilemma Game and Its Potential Use in Biology”. In: Vlamos P. (eds) GeNeDis 2018. Advances in Experimental Medicine and Biology, vol 1194, pp. 315-322. Springer, ISBN: 978-3-030-32621-0 (Print) 978-3-030-32622-7 (Online), 2020.
  
• Konstantinos Giannakis, Georgia Theocharopoulou, Christos Papalitsas, Sofia Fanarioti, Theodore Andronikos, “Particular Biomolecular Processes as Computing Paradigms”. In: Vlamos P. (eds) GeNeDis 2018. Advances in Experimental Medicine and Biology, vol 1194, pp. 225-238. Springer, ISBN: 978-3-030-32621-0 (Print) 978-3-030-32622-7 (Online), 2020.
  
• Christos Papalitsas, Theodore Andronikos, Panagiotis Karakostas, “Studying the impact of perturbation methods on the efficiency of GVNS for the ATSP”, 6th International Conference, ICVNS 2018, Sithonia, Greece, October 4–7, 2018, Revised Selected Papers. Springer Theoretical Computer Science and General Issues, Volume 11328, pp. 287-302, ISBN: 978-3-030-15842-2 (Print) 978-3-030-15843-9 (Online), 2019.
  
• Theodore Andronikos, Alexandros Singh, Konstantinos Giannakis, Spyros Sioutas,  “Computing probabilistic queries in the presence of uncertainty via probabilistic automata”, Algorithmic Aspects of Cloud Computing, Third International Workshop, ALGOCLOUD 2017, Vienna, Austria, 5 September, 2017, Revised Selected Papers. Springer Theoretical Computer Science and General Issues, Volume 10739, pp. 106-122, ISBN: 978-3-319-74874-0 (Print) 978-3-319-74875-7 (Online), 2018.
  
• Konstantinos Giannakis, Alexandros Singh, Kalliopi Kastampolidou, Christos Papalitsas, Theodore Andronikos, “QM Automata - A New Class of Restricted Quantum Membrane Automata”, GeNeDis 2016, Springer Advances in Experimental Medicine and Biology, Volume 988, pp. 193-204, ISBN: 978-3-319-56245-2 (Print) 978-3-319-56246-9 (Online), 2017.
  
• Konstantinos Giannakis, Theodore Andronikos, “Mitochondrial Fusion Through Membrane Automata”, GeNeDis 2014, Springer Advances in Experimental Medicine and Biology,  Volume 820, pp. 163-172, ISBN: 978-3-319-09011-5 (Print) 978-3-319-09012-2 (Online), 2015.
• Panayiotis Tsanakas, Theodore Andronikos, Nectarios Koziris, George Papakonstantinou, “Scheduling UET Grids with Unit Communication Time Delays Into Unbounded/Fixed Number of Processors”, Chapter 2, pp. 43-68, in Book/Volume 5, Advances in High Performance Computing Series: Highly Parallel Computations, Computational Mechanics Publications, UK, 2001.
• Foto Afrati, Theodore Andronikos, Theodore Kavalieros, “On the Expressiveness of Query Languages with Linear Constraints; Capturing Desirable Spatial Properties”, Constraint Databases and Applications, Springer-Verlag Lecture Notes in Computer Science, vol. 1191/1997, pp. 105-115, ISBN 3-540-62501-1, 1997.
• Foto Afrati, Theodore Andronikos, Theodore Kavalieros, “On the Expressiveness of First-Order Constraint Languages”, Constraint Databases, Springer-Verlag Lecture Notes in Computer Science, vol. 1034/1996, pp. 22-39, ISBN 3-540-60794-3, 1996.

Articles in Refereed International Conferences

• Dimitris Kostadimas, Kalliopi Kastampolidou, Theodore Andronikos, “Correlation of biological and computer viruses through evolutionary game theory”, IEEE Proceedings of the 16th International Workshop on Semantic and Social Media Adaptation and Personalization (SMAP), 4-5 November, Corfu, Greece, 2021.
• Christos Papalitsas, Kalliopi Kastampolidou, Theodore Andronikos, “Nature and quantum inspired procedures - a short literature review”, Proceedings of the 4th World Congress on Genetics, Geriatrics and Neurodegenerative Diseases Research (GeNeDis 2020), 8-11 October, Greece, 2020.
  
• Kalliopi Kastampolidou, Theodore Andronikos, “Microbes and the games they play”, Proceedings of the 4th World Congress on Genetics, Geriatrics and Neurodegenerative Diseases Research (GeNeDis 2020), 8-11 October, Greece, 2020.
  
• Konstantinos Giannakis, Georgia Theocharopoulou, Christos Papalitsas, Sofia Fanarioti, Theodore Andronikos, “A quantum-inspired optimization heuristic for the multiple sequence alignment problem in bio-computing”, 10th International Conference on Information, Intelligence, Systems and Applications (IISA 2019), 15-17 July, Patras, Greece, 2019.
  
• Georgia Theocharopoulou, Konstantinos Giannakis, Christos Papalitsas, Sofia Fanarioti, Theodore Andronikos, “Elements of game theory in a bio-inspired model of computation”, 10th International Conference on Information, Intelligence, Systems and Applications (IISA 2019), 15-17 July, Patras, Greece, 2019.
  
• Kalliopi Kastampolidou, Theodore Andronikos, “A survey of evolutionary games in biology”, Proceedings of the 3rd World Congress on Genetics, Geriatrics and Neurodegenerative Diseases Research (GeNeDis 2018), 25-28 October, Toronto, Canada, 2018.
  
• Kalliopi Kastampolidou, Maria Nefeli Nikiforos, Theodore Andronikos, “A brief survey of the Prisoners’ Dilemma game and its potential use in biology”, Proceedings of the 3rd World Congress on Genetics, Geriatrics and Neurodegenerative Diseases Research (GeNeDis 2018), 25-28 October, Toronto, Canada, 2018.
  
• Konstantinos Giannakis, Georgia Theocharopoulou, Christos Papalitsas, Sofia Fanarioti, Theodore Andronikos, “Particular biomolecular processes as computing paradigms”, Proceedings of the 3rd World Congress on Genetics, Geriatrics and Neurodegenerative Diseases Research (GeNeDis 2018), 25-28 October, Toronto, Canada, 2018.
  
• Konstantinos Giannakis, Christos Papalitsas, Theodore Andronikos, “Quantum Automata for Infinite Periodic Words”, 6th International Conference on Information, Intelligence, Systems and Applications (IISA), 6-8 July, Corfu, Greece, 2015.
• Konstantinos Giannakis, Christos Papalitsas, Theodore Andronikos, Dimitrios Theotokis, Angelo Sifaleras, “Initialization methods for the TSP with Time Windows using Variable Neighborhood Search”, 6th International Conference on Information, Intelligence, Systems and Applications (IISA), 6-8 July, Corfu, Greece, 2015.
• Konstantinos Giannakis, Theodore Andronikos, “Querying Linked Data and Büchi Automata”, IEEE Proceedings of the 9th International Workshop on Semantic and Social Media Adaptation and Personalization (SMAP), 6-7 November, Corfu, Greece, pp. 110 - 114, 2014.
• Konstantinos Giannakis, Theodore Andronikos, “Mitochondrial Fusion Through Membrane Automata”, Proceedings of the 1st World Congress on Geriatrics and Neurodegenerative Disease Research, (GeNeDis 2014), 10-13 April, Corfu, Greece, 2014.
• Theodore Andronikos, Michalis Stefanidakis, Ioannis Papadakis, “Adding Temporal Dimension to Ontologies via OWL Reification”, Proceedings of 13th Panhellenic Conference on Informatics - PCI 2009 Conference, 10-12 September, Corfu, Greece. IEEE Computer Society, pp. 19-22, 2009.
• Florina M. Ciorba, Ioannis Riakiotakis, Theodore Andronikos, Anthony T. Chronopoulos, George Papakonstantinou, "Optimal Synchronization Frequency for Dynamic Pipelined Computations on Heterogeneous Systems", IEEE International Conference on Cluster Computing (CLUSTER 2007), Austin, TX USA, September 17-20, 2007.
• Florina M. Ciorba, Ioannis Riakiotakis, Theodore Andronikos, Anthony T. Chronopoulos, George Papakonstantinou, "Studying the impact of synchronization frequency on scheduling tasks with dependencies in heterogeneous systems", 16th International Conference on Parallel Architectures and Compilation Techniques (PACT'07), Brasov, Romania, September 15-19, 2007.
• Florina M. Ciorba, Ioannis Riakiotakis, Theodore Andronikos, George Papakonstantinou, “Self-Adapting Scheduling for Tasks with Dependencies in Stochastic Environments”, Proceedings of the 5th International Workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Networks (HeteroPar'06), September 28, 2006, Barcelona, Spain.
• Andrew Koulouris, Theodore Andronikos, Christos Pavlatos, Alexandros C. Dimopoulos, Ioannis Panagopoulos, George Papakonstantinou, “Efficient Signal Processing using Syntactic Pattern Recognition Methods”, Proceedings of the IASTED Conference on Signal and Image Processing (SIP 2006), August 14-16, 2006, Honolulu, Hawaii, USA.
• Florina M. Ciorba, Theodore Andronikos, Ioannis Riakiotakis, Anthony T. Chronopoulos, George Papakonstantinou, “Dynamic Multi Phase Scheduling for Heterogeneous Clusters”, Proceedings of the 20th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2006), April 25-29, 2006, Rhodes Island, Greece.
• Florina M. Ciorba, Theodore Andronikos, Ioannis Drositis, George Papakonstantinou, Panayiotis Tsanakas, “Reducing the Communication Cost via Chain Pattern Scheduling”, Proceedings of the 4th IEEE International Symposium on Network Computing and Applications (NCA 2005), pp. 186-193, July 27-29, 2005, Cambridge, MA USA.
• Theodore Andronikos, Florina M. Ciorba, Panayiotis theodoropoulos, Dimitris Kamenopoulos, George Papakonstantinou, “Code generation for General Loops using methods from Computational Geometry”, Proceedings of the 16th IASTED Parallel and Distributed Computing and Systems Conference (PCDS 2004), pp. 348-353, Cambrige, MA USA, November 9-11, 2004.
• Foto Afrati, Theodore Andronikos, Vassia Pavlaki, Eugenie Foustoucos, Irène Guessarian, “From CTL to Datalog”, Principles of Computing and Knowledge: Paris C. Kanellakis Memorial Workshop (PCK50), pp. 72-85, San Diego, June 2003.
• Theodore Andronikos, Marios Kalathas, Florina M. Ciorba, Panayiotis theodoropoulos, George Papakonstantinou, Panayiotis Tsanakas, “Scheduling nested loops with the least number of processors”, Proceedings of the 21st IASTED International Conference on Applied Informatics, pp. 713-718, Innsbruck, Austria, February 2003.
• Ioannis Drositis, Theodore Andronikos, Aggelos Kokorogiannis, George Papakonstantinou, Nectarios Koziris, “Geometric Scheduling of 2-D Uniform Dependence Loops”, Proceedings of the 2001 IEEE International Conference on Parallel and Distributed Systems (ICPADS 2001), IEEE Press, pp. 259-264, Korea, 2001.
• Theodore Andronikos, Nectarios Koziris, George Papakonstantinou, Panayiotis Tsanakas, “Optimal Scheduling for UET-UCT Grids Into Fixed Number of Processors”, Proceedings of 8th Euromicro Workshop on Parallel and Distributed Processing (PDP 2000), IEEE Press, pp. 237-243, Rhodes, Greece, 2000.
• Andrew Koulouris, Nectarios Koziris, Theodore Andronikos, George Papakonstantinou, Panayiotis Tsanakas, “A Parallel Parsing VLSI Architecture for Arbitrary Context Free Grammars”, Proceedings of the 1998 IEEE International Conference on Parallel and Distributed Systems (ICPADS 98), IEEE Press, pp. 783-790, Taiwan, ROC, Dec. 1998.
• Nectarios Koziris, George Economakos, Theodore Andronikos, George Papakonstantinou, Panayiotis Tsanakas, “Optimal Automatic Hardware Synthesis For Signal Processing Algorithms”, Proceedings of 13th IEEE International Conference on Digital Signal Processing (DSP 97), IEEE Press, pp. 1011-1014, Santorini, Greece, 1997.
• Theodore Andronikos, Nectarios Koziris, George Papakonstantinou, Panayiotis Tsanakas, “Optimal Scheduling for UET-UCT Generalized n-Dimensional Grid Task Graphs”, Proceedings of the 11th IEEE/ACM International Parallel Processing Symposium (IPPS 97), IEEE Press, pp. 146-151, Geneva, Switzerland, 1997.